hest.HESTData.HESTData
======================

.. currentmodule:: hest.HESTData

.. add toctree option to make autodoc generate the pages

.. autoclass:: HESTData



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~hest.HESTData.HESTData.shapes
    ~hest.HESTData.HESTData.tissue_contours





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~hest.HESTData.HESTData.dump_patches
    ~hest.HESTData.HESTData.ensembl_id_to_gene
    ~hest.HESTData.HESTData.from_paths
    ~hest.HESTData.HESTData.get_shapes
    ~hest.HESTData.HESTData.get_tissue_vis
    ~hest.HESTData.HESTData.load_wsi
    ~hest.HESTData.HESTData.save
    ~hest.HESTData.HESTData.save_spatial_plot
    ~hest.HESTData.HESTData.save_tissue_contours
    ~hest.HESTData.HESTData.save_tissue_seg_pkl
    ~hest.HESTData.HESTData.save_tissue_vis
    ~hest.HESTData.HESTData.segment_tissue
    ~hest.HESTData.HESTData.to_spatial_data





Attributes
~~~~~~~~~~~



.. autoattribute:: HESTData.shapes

.. autoattribute:: HESTData.tissue_contours






Methods
~~~~~~~



.. automethod:: HESTData.dump_patches

.. automethod:: HESTData.ensembl_id_to_gene

.. automethod:: HESTData.from_paths

.. automethod:: HESTData.get_shapes

.. automethod:: HESTData.get_tissue_vis

.. automethod:: HESTData.load_wsi

.. automethod:: HESTData.save

.. automethod:: HESTData.save_spatial_plot

.. automethod:: HESTData.save_tissue_contours

.. automethod:: HESTData.save_tissue_seg_pkl

.. automethod:: HESTData.save_tissue_vis

.. automethod:: HESTData.segment_tissue

.. automethod:: HESTData.to_spatial_data